PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA01G48370.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

TCP

Protein Properties

Length: 321aa MW: 33698 Da PI: 6.6943

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA01G48370.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	121.8	7.8e-38	82	167	3	88
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg 88 +k+++++++hTkv+gR+RR+R++a+caa +F+L++eLG+++d++t++WLlqqa+pai ++tgt++++as+ +++ s + ns + ONIVA01G48370.1 82 PKRSSNKDRHTKVDGRGRRIRMPALCAAWIFQLTRELGHKSDGETVQWLLQQAEPAIVAATGTGTIPASALASVAPSLPSPNSALS 167 6999***********************************************************99999766222222222222222 PP

Sequence ? help Back to Top
Protein Sequence Length: 321 aa Download sequence
MDPKFPPPPP LNKTEPTTTT TNQQHHHDEQ QQQHRLQIQV HPQQQEQQDG GGGGGKDQQQ 60 QQQMQVVVAA AAGERRMQGL GPKRSSNKDR HTKVDGRGRR IRMPALCAAW IFQLTRELGH 120 KSDGETVQWL LQQAEPAIVA ATGTGTIPAS ALASVAPSLP SPNSALSRSH HHHHHMWAAA 180 PPTASAGFAG AGFSGADSGV IGGIMQRMGI PAGIELQGGG AGGLGGGGGG GGGHIGFAPM 240 FAGHAAAAAA MPGLELGLSQ DGHIGVLAAQ SLSQFYHQVG AAGQLQHQHQ HQHHHQQQQQ 300 QQQEDGEDDR DDGESDEESG Q

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27010.1	3e-38	TCP family protein

Link Out ? help Back to Top
Ensembl	ONIVA01G48370.1