PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA01G52000.1
Organism
Oryza sativa f. spontanea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family M-type_MADS
Protein Properties Length: 208aa    MW: 22888.3 Da    PI: 10.5546
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA01G52000.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF67.31.5e-212471249
                     ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
           SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                     rie++  rqv fskRr+g +KKA+ELS+LC a+va ++fs+ gk y +
  ONIVA01G52000.1 24 RIESEEARQVCFSKRRAGFFKKASELSILCSADVAAVVFSPAGKAYSF 71
                     8*******************************************9988 PP
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    
MAMQVAAPSR RRPSLGRQKI EIRRIESEEA RQVCFSKRRA GFFKKASELS ILCSADVAAV  60
VFSPAGKAYS FGHPSVECLL ERFLPDSSSG AAARVRRGAN NNGGGGMVGE LNRQYGELRA  120
MVEAHKARQE RADEKIEMER AAGRWLPMDA DVRRMSPEEL MAFGTGLMAV QAAVSARADQ  180
MLRDALLIGR RPPTTTTAGF GFFHMPHY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.17e-26M-type_MADS family protein