PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA01G52080.1
Organism
Oryza sativa f. spontanea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family GATA
Protein Properties Length: 141aa    MW: 15499.7 Da    PI: 9.6526
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA01G52080.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA61.21.3e-192458135
             GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                     C+ C+ttkTplWR gp g+k+LCnaCG++yrk+++
  ONIVA01G52080.1 24 CADCHTTKTPLWRGGPGGPKSLCNACGIRYRKRRR 58
                     ********************************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 141 aa     Download sequence    
MEMDSSSSPV DKVDPDECNG SKACADCHTT KTPLWRGGPG GPKSLCNACG IRYRKRRRAA  60
LGLDSAATAT EGAEQQQKKT KAKKEKAEEE EVTMELHTVG FRSKDAAVLK QRRRMRRRKC  120
LGEEERAAIL LMALSSGVIY A
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15458RKRRR
25483RKRRRAALGLDSAATATEGAEQQQKKTKAK
35486RKRRRAALGLDSAATATEGAEQQQKKTKAKKEK
45584RKRRRAALGLDSAATATEGAEQQQKKTKAK
5111117QRRRMRR
6112118RRRMRRR
7112119RRRMRRRK
8113119RRRMRRR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49300.16e-25GATA family protein