PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA01G52120.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

MYB

Protein Properties

Length: 250aa MW: 27365.3 Da PI: 10.4011

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA01G52120.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	50.4	5.2e-16	10	55	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W +eEd ll ++v+q+G+++W+ I+ ++ gR++k+c++rw + ONIVA01G52120.1 10 KGSWRAEEDALLTRLVAQHGPHRWSIISGAIP-GRSGKSCRLRWCNQ 55 799***************************.*********985 PP
2	Myb_DNA-binding	60.1	4.8e-19	64	106	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++T++Ed ll+ a++++G++ W+tIar ++ gRt++++k++w++ ONIVA01G52120.1 64 PFTPQEDALLAAAHARHGNK-WATIARLLP-GRTDNSVKNHWNSN 106 89****************.*****.*********976 PP

Sequence ? help Back to Top
Protein Sequence Length: 250 aa Download sequence
MGMCSKTRKK GSWRAEEDAL LTRLVAQHGP HRWSIISGAI PGRSGKSCRL RWCNQLSPAV 60 QHRPFTPQED ALLAAAHARH GNKWATIARL LPGRTDNSVK NHWNSNLRRC LRRQAKFKSK 120 DPDLLPDPIN IPPDCIVVLN DDDEPADRPV TPPAIIQAQA QETLPSLTLS LSLSLPGAAA 180 AAAEVEVAPP PPRALAAASE IQDGSSRSSS ASRVMLQVMR QMVREEVQRY TAQLAYSLMA 240 LASCSRRPPN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50060.1	1e-48	MYB family protein

Link Out ? help Back to Top
Ensembl	ONIVA01G52120.1