PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA02G01060.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

C2H2

Protein Properties

Length: 418aa MW: 47750 Da PI: 8.6166

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA02G01060.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.6	5.2e-06	110	132	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cg sF + +Lk+H+++H ONIVA02G01060.1 110 HTCQECGASFQKPAHLKQHMQSH 132 79*******************99 PP
2	zf-C2H2	21.8	5e-07	138	162	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 + Cp dC+ s+ rk++L+rH+ +H ONIVA02G01060.1 138 FICPleDCPFSYIRKDHLNRHMLKH 162 78*********************99 PP
3	zf-C2H2	15.4	5.4e-05	167	192	1	23
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 ++C+ Cg+ Fs k n++rH + H ONIVA02G01060.1 167 FTCSmdGCGRKFSIKANMQRHVKEiH 192 89********************9988 PP
4	zf-C2H2	15.6	4.5e-05	204	228	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 ++C+ C+k+F+ s +k+H +H ONIVA02G01060.1 204 FVCKeeGCNKVFKYASKMKKHEESH 228 89*******************9988 PP
5	zf-C2H2	17.7	1e-05	294	318	2	23
EET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCp..dCgksFsrksnLkrHirt.H 23 kC+ C sFs+ksnL++Hi+ H ONIVA02G01060.1 294 KCSfeGCECSFSNKSNLTKHIKAsH 318 688899***************9888 PP

Sequence ? help Back to Top
Protein Sequence Length: 418 aa Download sequence
MKARRNQEPQ SSLPAAAAAA PSSSRRSAGN HTSSQPRSPP MCSGDDIDGD TRVEATQHRD 60 IRRYKCEFCT VVRSKKCLIR AHMVAHHKEE LDKSEIYKSN GEKVVHEGDH TCQECGASFQ 120 KPAHLKQHMQ SHSDERSFIC PLEDCPFSYI RKDHLNRHML KHQGKLFTCS MDGCGRKFSI 180 KANMQRHVKE IHEDETATKS NRQFVCKEEG CNKVFKYASK MKKHEESHVK LDYVEVVCCE 240 PGCMKTFTNV ECLRAHNQAC HQYVQCDICG EKHLKKNIKR HLRAHEVPST ERIKCSFEGC 300 ECSFSNKSNL TKHIKASHDQ VKPFACRFTG CEKVFPYKHV RDNHEKSSAH VYTQANFTEM 360 DEHLLSCPRG GRKRKAVTVE TLTRKRVTMH GDASSLDNGT EYLRWLLSGG DDDSSQTH

Sequence ? help Back to Top

Protein Sequence Length: 418 aa Download sequence

MKARRNQEPQ SSLPAAAAAA PSSSRRSAGN HTSSQPRSPP MCSGDDIDGD TRVEATQHRD  60
IRRYKCEFCT VVRSKKCLIR AHMVAHHKEE LDKSEIYKSN GEKVVHEGDH TCQECGASFQ  120
KPAHLKQHMQ SHSDERSFIC PLEDCPFSYI RKDHLNRHML KHQGKLFTCS MDGCGRKFSI  180
KANMQRHVKE IHEDETATKS NRQFVCKEEG CNKVFKYASK MKKHEESHVK LDYVEVVCCE  240
PGCMKTFTNV ECLRAHNQAC HQYVQCDICG EKHLKKNIKR HLRAHEVPST ERIKCSFEGC  300
ECSFSNKSNL TKHIKASHDQ VKPFACRFTG CEKVFPYKHV RDNHEKSSAH VYTQANFTEM  360
DEHLLSCPRG GRKRKAVTVE TLTRKRVTMH GDASSLDNGT EYLRWLLSGG DDDSSQTH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72050.2	1e-103	C2H2 family protein

Link Out ? help Back to Top
Ensembl	ONIVA02G01060.1