PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA02G03070.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

SBP

Protein Properties

Length: 469aa MW: 50278.9 Da PI: 8.0635

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA02G03070.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	127.2	6.4e-40	182	258	2	78
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 CqvegC++dls+ak yhr+h+vCe hsk+ +v+v+gle+rfCqqCsrfh l efD++krsCrrrL++hn+rrrk+q+ ONIVA02G03070.1 182 CQVEGCNVDLSSAKPYHRKHRVCEPHSKTLKVIVAGLERRFCQQCSRFHGLAEFDQKKRSCRRRLHDHNARRRKPQP 258 **************************************************************************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 469 aa Download sequence
MGSFAMDWNQ KSSVLWDWEN MPPIGNSANE NPKNVMLAES KLAGVGVDIG HESGHSSGGT 60 FSSSSEIGYG SSKSSISASI DSPSKVGNTI ELNFASAEEH DKNMDKGKSK VDDTGTSRSP 120 VVAANRVEPL IGLKLGKRTY FEDVCGGQNV KSSPSGVSVA TPSPGLAKKV KVAQQNTQNP 180 HCQVEGCNVD LSSAKPYHRK HRVCEPHSKT LKVIVAGLER RFCQQCSRFH GLAEFDQKKR 240 SCRRRLHDHN ARRRKPQPEA ISLSSSRLST LLYGDARQQA SFLFGQAPYG QMGSCASSWD 300 NPVPGGFKFT ATKAPWSRPT IAAGVDGTHV SNQQASGNVL PHGAHHSFDG LMAFKETNAK 360 VLNQGMEASA VASGSARGPD FEHALSLLSI DSVGAANLQP GSQIHPGVTA IAGTSNPVMM 420 PSPAIWQGGL SLDQQAQFQA FDRLGNDDDE DHLQLPKPSY DNSHYDQMN

Sequence ? help Back to Top

Protein Sequence Length: 469 aa Download sequence

MGSFAMDWNQ KSSVLWDWEN MPPIGNSANE NPKNVMLAES KLAGVGVDIG HESGHSSGGT  60
FSSSSEIGYG SSKSSISASI DSPSKVGNTI ELNFASAEEH DKNMDKGKSK VDDTGTSRSP  120
VVAANRVEPL IGLKLGKRTY FEDVCGGQNV KSSPSGVSVA TPSPGLAKKV KVAQQNTQNP  180
HCQVEGCNVD LSSAKPYHRK HRVCEPHSKT LKVIVAGLER RFCQQCSRFH GLAEFDQKKR  240
SCRRRLHDHN ARRRKPQPEA ISLSSSRLST LLYGDARQQA SFLFGQAPYG QMGSCASSWD  300
NPVPGGFKFT ATKAPWSRPT IAAGVDGTHV SNQQASGNVL PHGAHHSFDG LMAFKETNAK  360
VLNQGMEASA VASGSARGPD FEHALSLLSI DSVGAANLQP GSQIHPGVTA IAGTSNPVMM  420
PSPAIWQGGL SLDQQAQFQA FDRLGNDDDE DHLQLPKPSY DNSHYDQMN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	238	255	KKRSCRRRLHDHNARRRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43270.1	3e-43	SBP family protein

Link Out ? help Back to Top
Ensembl	ONIVA02G03070.1