PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA02G03100.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

YABBY

Protein Properties

Length: 212aa MW: 23341.4 Da PI: 8.8168

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA02G03100.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	225.4	1.6e-69	6	182	5	170
YABBY 5 ssseqvCyvqCnfCntila.....vsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkee......lleelkveeenlksnve 87 +eqvCyv+CnfCntila vsvP +s++++vtvrCGhCt+llsvnl+ ++ +a ++ +++ +e ++ + e ++ + ONIVA02G03100.1 6 APAEQVCYVHCNFCNTILAfsidtVSVPGNSMLNIVTVRCGHCTNLLSVNLRGLMHSAPALQDHHHHHLQEsglsgcFRDQSGYPEFGFSAASS 99 5689************76666689*************************999986654444444447777667777777777777777 PP YABBY 88 keesastsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 +++ ++ ++s +++++ ++ rPPekrqrvPsaynrfikeei+rika+nPdishreafs+aaknWah+P+ihfgl ONIVA02G03100.1 100 SSKLRLPPAAAAMVSYSQQNQQLEQALHARPPEKRQRVPSAYNRFIKEEIRRIKANNPDISHREAFSTAAKNWAHYPNIHFGL 182 77777777888888988888888777889**************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 212 aa Download sequence
MSAQIAPAEQ VCYVHCNFCN TILAFSIDTV SVPGNSMLNI VTVRCGHCTN LLSVNLRGLM 60 HSAPALQDHH HHHLQESGLS GCFRDQSGYP EFGFSAASSS SKLRLPPAAA AMVSYSQQNQ 120 QLEQALHARP PEKRQRVPSA YNRFIKEEIR RIKANNPDIS HREAFSTAAK NWAHYPNIHF 180 GLSPGHEGGK KLVDVDPIPT APSSKKIQGF YS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26580.1	5e-57	YABBY family protein

Link Out ? help Back to Top
Ensembl	ONIVA02G03100.1