PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA02G03100.2

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

YABBY

Protein Properties

Length: 207aa MW: 22777.8 Da PI: 9.042

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA02G03100.2	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	235.4	1.3e-72	6	177	5	170
YABBY 5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkee......lleelkveeenlksnvekeesa 92 +eqvCyv+CnfCntilavsvP +s++++vtvrCGhCt+llsvnl+ ++ +a ++ +++ +e ++ + e ++ ++++ ONIVA02G03100.2 6 APAEQVCYVHCNFCNTILAVSVPGNSMLNIVTVRCGHCTNLLSVNLRGLMHSAPALQDHHHHHLQEsglsgcFRDQSGYPEFGFSAASSSSKLR 99 5689********************************************99998665444444444777766777777777777777777777 PP YABBY 93 stsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 ++ ++s +++++ ++ rPPekrqrvPsaynrfikeei+rika+nPdishreafs+aaknWah+P+ihfgl ONIVA02G03100.2 100 LPPAAAAMVSYSQQNQQLEQALHARPPEKRQRVPSAYNRFIKEEIRRIKANNPDISHREAFSTAAKNWAHYPNIHFGL 177 777888888988888888777889**************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 207 aa Download sequence
MSAQIAPAEQ VCYVHCNFCN TILAVSVPGN SMLNIVTVRC GHCTNLLSVN LRGLMHSAPA 60 LQDHHHHHLQ ESGLSGCFRD QSGYPEFGFS AASSSSKLRL PPAAAAMVSY SQQNQQLEQA 120 LHARPPEKRQ RVPSAYNRFI KEEIRRIKAN NPDISHREAF STAAKNWAHY PNIHFGLSPG 180 HEGGKKLVDV DPIPTAPSSK KIQGFYS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26580.1	1e-59	YABBY family protein

Link Out ? help Back to Top
Ensembl	ONIVA02G03100.2