PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA02G04450.2
Organism
Oryza sativa f. spontanea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family Whirly
Protein Properties Length: 286aa    MW: 31098.4 Da    PI: 10.4705
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA02G04450.2genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly181.91.2e-56952322139
           Whirly   2 vyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrkalk 95 
                      v+k+kaal++++++p+f++l+sg  +++++G+++l++ +a+++rkyd++kkq fals+tev++l++l++ esceffhdp++k+s+eG+v+k+l+
  ONIVA02G04450.2  95 VFKGKAALSMQPILPSFSKLESGGSRVNKNGSVMLTFFPAVGQRKYDYSKKQLFALSPTEVGSLISLGPAESCEFFHDPSMKSSHEGQVKKSLS 188
                      9********************************************************************************************* PP

           Whirly  96 vePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsllv 139
                      v Pl + sG+f+n++v n+l+k+ e++s+P+skaef+v+r++l+
  ONIVA02G04450.2 189 VTPLGNDSGYFLNITVLNNLQKTTERLSLPISKAEFTVMRTALS 232
                      *****************************************985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    
MAHSLMAVGP GRPDWAVGWP TCQARKRRHR CGWLPETSGA FPAAFFSSPI PFGIRFSVGN  60
ATAAESQGQR CSASPASSPP PPENTSGRKF ASYTVFKGKA ALSMQPILPS FSKLESGGSR  120
VNKNGSVMLT FFPAVGQRKY DYSKKQLFAL SPTEVGSLIS LGPAESCEFF HDPSMKSSHE  180
GQVKKSLSVT PLGNDSGYFL NITVLNNLQK TTERLSLPIS KAEFTVMRTA LSFALPHILG  240
WDQALTNHQP SPSPASKPRV ERPHPDSEWE RGKGTFIQRA TVTLLF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71260.12e-73Whirly family protein