PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA02G06890.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

CO-like

Protein Properties

Length: 349aa MW: 35766.2 Da PI: 6.658

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA02G06890.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	23.8	9e-08	59	104	3	42
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 ++C+ +e ++ C+ + lC+ C + +H H++vp+ ONIVA02G06890.1 59 VWVCEVCELAPAAVTCKADAAALCAACDSDIHDAnplarrHERVPV 104 689*****************************44788888999986 PP
2	CCT	69.5	8.6e-24	281	324	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R+a+l+RY+eKrk+R+FeK+irY+sRKa+Ae+RpRvKGrF+k+a ONIVA02G06890.1 281 RAARLMRYREKRKNRRFEKTIRYASRKAYAETRPRVKGRFAKRA 324 99****************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 349 aa Download sequence
MEMELGLGRY WGVGGRRCGA CAVAPAAVHC RTCDGGGGGG GYLCAGCDAE HGRAGHERVW 60 VCEVCELAPA AVTCKADAAA LCAACDSDIH DANPLARRHE RVPVHPIGSS AAPPPDALLL 120 GGENDAAAAV DGGGGGKEVK LDFLFADFMD PYLGGSPELA RFPHADSVVP NHNGSAGPAM 180 ELGFAGGGGA AVKPSYSSYT AASLGNSGSS SEVGLVPDAI CGGGGGGIIE LDFAQSKAAY 240 LPYASTPSHS MSSSMDMGVA APEMSDGAAA AAGRAYAAEG RAARLMRYRE KRKNRRFEKT 300 IRYASRKAYA ETRPRVKGRF AKRADDHDAA APPPQIMLDF AGYGVVPTF

Sequence ? help Back to Top

Protein Sequence Length: 349 aa Download sequence

MEMELGLGRY WGVGGRRCGA CAVAPAAVHC RTCDGGGGGG GYLCAGCDAE HGRAGHERVW  60
VCEVCELAPA AVTCKADAAA LCAACDSDIH DANPLARRHE RVPVHPIGSS AAPPPDALLL  120
GGENDAAAAV DGGGGGKEVK LDFLFADFMD PYLGGSPELA RFPHADSVVP NHNGSAGPAM  180
ELGFAGGGGA AVKPSYSSYT AASLGNSGSS SEVGLVPDAI CGGGGGGIIE LDFAQSKAAY  240
LPYASTPSHS MSSSMDMGVA APEMSDGAAA AAGRAYAAEG RAARLMRYRE KRKNRRFEKT  300
IRYASRKAYA ETRPRVKGRF AKRADDHDAA APPPQIMLDF AGYGVVPTF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24790.1	5e-23	CO-like family protein

Link Out ? help Back to Top
Ensembl	ONIVA02G06890.1