PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA02G10570.1
Organism
Oryza sativa f. spontanea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 188aa    MW: 19304.5 Da    PI: 9.7918
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA02G10570.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH20.77.3e-071971555
                     HHHHHHHHHHHHHHHHHHHHCTSCCC.....TTS-STCHHHHHHHHHHHHHHH CS
              HLH  5 hnerErrRRdriNsafeeLrellPkas..kapskKlsKaeiLekAveYIksLq 55
                      +  Er RR+++N+ ++ L +l+ +a+  ++ +   +  + L  A eYI++ q
  ONIVA02G10570.1 19 RKTTERIRREQMNKLYSDLDSLVGSAPptGGAAAATTRPDRLGVAAEYIRQKQ 71
                     6789*********************555666666699999*********9866 PP
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    
MDIPPPSAGG GGGGGKTDRK TTERIRREQM NKLYSDLDSL VGSAPPTGGA AAATTRPDRL  60
GVAAEYIRQK QERVDMLREK KRELTGGGGG GSSSSSGAGA ATAAAPEVEV QHLGSGLHAI  120
LFTGAPPTDG ASFHRAIRAV EDAGGQVQNA HFSVAGAKAV YTIHAMIGDG YGGIERVVQR  180
LKEAIRSN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.13e-15bHLH family protein