PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA02G16710.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

bHLH

Protein Properties

Length: 378aa MW: 41477 Da PI: 5.9982

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA02G16710.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	15	4.4e-05	40	124	1	54
CHHHHHHHHHHHHHHHH....HHHHHHHCTSCC.C.............................TTS-STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriN....safeeLrellPk.as..........................kapskKlsKaeiLekAveYIksL 54 r++ + rE+ RRdr+N saf+ +++ ++ ++ ++++Ka+iL A++ +k+L ONIVA02G16710.1 40 RKVQKADREKMRRDRLNeqgdSAFSPFSTVILAtRCyanvlveiqpeitkqavaplsfpsntDPDRPRNDKATILSDAIQMLKDL 124 5677889********555559******777*********************6666677*************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 378 aa Download sequence
MDPRSSQAQE DGFFHPRDGA CPADSSGKTE CKTQGSIATR KVQKADREKM RRDRLNEQGD 60 SAFSPFSTVI LATRCYANVL VEIQPEITKQ AVAPLSFPSN TDPDRPRNDK ATILSDAIQM 120 LKDLTSQVNK LKAEYTSLSE EARELTQEKN ELRDEKVSLK FEVDNLNTQY QQRMRVLYPW 180 TGMEPSVVIG PPLPYPFSVP VPVPVPIPSG AVPMHPQLQA YPYFRNQTSG TVSNPCTPYM 240 AYTQPIHPPT DQLSNQFSAP VQHSSSNQSH SMAQDSRSKS SALQQVSCRG KHDDFDDVAT 300 DLELKTPGSS APLQSEIANK DSSSDLKKKK QFIQETKGSS LTEGSSSSSR CSSSGPPDVS 360 NSIEGGSVAD DQRSTVQT

Sequence ? help Back to Top

Protein Sequence Length: 378 aa Download sequence

MDPRSSQAQE DGFFHPRDGA CPADSSGKTE CKTQGSIATR KVQKADREKM RRDRLNEQGD  60
SAFSPFSTVI LATRCYANVL VEIQPEITKQ AVAPLSFPSN TDPDRPRNDK ATILSDAIQM  120
LKDLTSQVNK LKAEYTSLSE EARELTQEKN ELRDEKVSLK FEVDNLNTQY QQRMRVLYPW  180
TGMEPSVVIG PPLPYPFSVP VPVPVPIPSG AVPMHPQLQA YPYFRNQTSG TVSNPCTPYM  240
AYTQPIHPPT DQLSNQFSAP VQHSSSNQSH SMAQDSRSKS SALQQVSCRG KHDDFDDVAT  300
DLELKTPGSS APLQSEIANK DSSSDLKKKK QFIQETKGSS LTEGSSSSSR CSSSGPPDVS  360
NSIEGGSVAD DQRSTVQT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19860.1	7e-52	bHLH family protein

Link Out ? help Back to Top
Ensembl	ONIVA02G16710.1