PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA02G19000.1
Organism
Oryza sativa f. spontanea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family GRAS
Protein Properties Length: 100aa    MW: 10887.6 Da    PI: 10.5932
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA02G19000.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS76.64.5e-24399277374
             GRAS 277 reseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsv 370
                      ++s+ ++k+Er++++++i+++v ++      +++ ++ Wr+ l +aGF pv++s+ a++qa++ll+k +++g+r+e + gsl+l W++ +L sv
  ONIVA02G19000.1   3 TDSDVAAKIERFWVQPKIQECVRAAVGV-GGDKTAASAWRATLVSAGFVPVQVSSMAEAQAESLLKKLPVRGFRLERRAGSLFLHWQRGELASV 95 
                      6789999***************988776.6888899********************************************************** PP

             GRAS 371 SaWr 374
                      SaWr
  ONIVA02G19000.1  96 SAWR 99 
                      ***8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 100 aa     Download sequence    
MGTDSDVAAK IERFWVQPKI QECVRAAVGV GGDKTAASAW RATLVSAGFV PVQVSSMAEA  60
QAESLLKKLP VRGFRLERRA GSLFLHWQRG ELASVSAWRC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45160.15e-24GRAS family protein