PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA02G20150.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

M-type_MADS

Protein Properties

Length: 209aa MW: 23363.4 Da PI: 10.5971

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA02G20150.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	23.5	7e-08	14	38	6	30
HHHHHHHHHHHHHHHHHHHHHHHHH CS SRF-TF 6 ksnrqvtfskRrngilKKAeELSvL 30 + +rqvtf kR+ng+ KK +E +L ONIVA02G20150.1 14 DVKRQVTFKKRLNGLTKKVSEFATL 38 689******************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 209 aa Download sequence
MALRKMKLQR IVIDVKRQVT FKKRLNGLTK KVSEFATLFL MVYGEVEVQA TKVWPLVWKA 60 TRVLEHFKAM PQLDRYKKMT DLEGILNEQV DKLKEELHKV GRDADESDTK LILIEALNGH 120 RPSLGGLTIE QITSLGLMAN AHLKIVNNRL KKLREQGLIP ASLLLSGTEV PIQREGWLMD 180 VARGIGSMGN NRFRGTSGSG TAGSNGDMA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G48670.1	6e-18	M-type_MADS family protein

Link Out ? help Back to Top
Ensembl	ONIVA02G20150.1