PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA02G22250.1
Organism
Oryza sativa f. spontanea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family FAR1
Protein Properties Length: 288aa    MW: 31874.2 Da    PI: 5.2925
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA02G22250.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR172.69e-23105191290
             FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                       Y++Y++++GFs+rk k+++ + +++i ++++ Cskeg +e e+ +  +++ + ++trt+Cka+++ + +++g+w+v++l+++HnH+la
  ONIVA02G22250.1 105 LYCDYGHRMGFSIRKGKQSYFTGTKRIRTKDYFCSKEGLKEGERLT--DANFNDPHTRTNCKAMVRFRVNNHGEWKVIRLVSDHNHNLA 191
                      7***************************************999877..9999***********************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    
MVNTDGEGGC EGGGGDPMCV DDNAIVAVET GVGVDQGIGS QHDDAGGDRV MEGQGAVTNS  60
GDEMGMRAYG DEAETEEAAT VHGSKEGTEE LLRKVVYSEE AAYKLYCDYG HRMGFSIRKG  120
KQSYFTGTKR IRTKDYFCSK EGLKEGERLT DANFNDPHTR TNCKAMVRFR VNNHGEWKVI  180
RLVSDHNHNL ARPEERHLLR SARSLIAGRS SSVETSKQDS LSCYISMART LAIGNADLQN  240
LVRHLKSRAN EDGNEELRKS LWETLESGEK ELEKYLENVT QYALSYAT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.18e-16FAR1 family protein