PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA02G23040.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

bHLH

Protein Properties

Length: 492aa MW: 51234.2 Da PI: 5.1858

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA02G23040.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	38.6	2e-12	293	338	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR++i +++ L+el+P++ K +Ka++L + ++Y+k Lq ONIVA02G23040.1 293 HSIAERLRREKISDRMKDLQELVPNS-----NKTNKASMLDEIIDYVKFLQ 338 99*********************7.....5****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 492 aa Download sequence
MGGFAYPFTP SPAWSRDAVF AGSPWAAGGV SSLADALVSY GAVDDEEAAF LGKTAASSPS 60 TARLHEQQQL LLEAELLRHG DGLGFAAMDD DGGAAMLGAL EPCAMPLTDS GGPPVICSSS 120 SNDSSGSEHS AAMPAGGGFL VGEQQQHVPP AAYAAGGVLP SMATGEETPQ SFGFGSLFNG 180 DLLQEANVSK YHHQQQQQQL GVVPSSQPHH LNEFSSGLHH LNLSSLISGP LASFNATQSH 240 RQPAEACGGK NGGAAPFVNL SEVLPKGNGS GSAGNGAPKP RVRARRGQAT DPHSIAERLR 300 REKISDRMKD LQELVPNSNK TNKASMLDEI IDYVKFLQLQ VKVLSMSRLG AAEAVVPLLT 360 ETQTESPGFL LSPRSSSGER QAGAGAVTGG LPGDQPELLD GGAMFEQEVV KLMEDNMTTA 420 MQYLQSKGLC LMPVALASAI SAQKGTSSAA VRPEKKKNGD GDGGGDEEDV KGEFDAPRRP 480 PVGRPKEMRS RV

Sequence ? help Back to Top

Protein Sequence Length: 492 aa Download sequence

MGGFAYPFTP SPAWSRDAVF AGSPWAAGGV SSLADALVSY GAVDDEEAAF LGKTAASSPS  60
TARLHEQQQL LLEAELLRHG DGLGFAAMDD DGGAAMLGAL EPCAMPLTDS GGPPVICSSS  120
SNDSSGSEHS AAMPAGGGFL VGEQQQHVPP AAYAAGGVLP SMATGEETPQ SFGFGSLFNG  180
DLLQEANVSK YHHQQQQQQL GVVPSSQPHH LNEFSSGLHH LNLSSLISGP LASFNATQSH  240
RQPAEACGGK NGGAAPFVNL SEVLPKGNGS GSAGNGAPKP RVRARRGQAT DPHSIAERLR  300
REKISDRMKD LQELVPNSNK TNKASMLDEI IDYVKFLQLQ VKVLSMSRLG AAEAVVPLLT  360
ETQTESPGFL LSPRSSSGER QAGAGAVTGG LPGDQPELLD GGAMFEQEVV KLMEDNMTTA  420
MQYLQSKGLC LMPVALASAI SAQKGTSSAA VRPEKKKNGD GDGGGDEEDV KGEFDAPRRP  480
PVGRPKEMRS RV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58010.1	5e-56	bHLH family protein

Link Out ? help Back to Top
Ensembl	ONIVA02G23040.1