PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA02G23610.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

C2H2

Protein Properties

Length: 386aa MW: 40739.9 Da PI: 7.1568

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA02G23610.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	21.4	6.5e-07	174	195	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C +Cgk F+r nL+ H+r H ONIVA02G23610.1 174 FCDICGKGFRRDANLRMHMRAH 195 6*******************99 PP
2	zf-C2H2	12.4	0.00047	259	283	1	23
EEETTTT..EEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCg..ksFsrksnLkrHirtH 23 y C+ Cg k+F +L++H+r + ONIVA02G23610.1 259 YACERCGgkKRFAVLADLRSHLRHC 283 89********************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 386 aa Download sequence
MKSTTHLLAG GGGGGSVAPP TAATAPTLAM EVGDPSGALV GGAGGAGAGG GDGDARDALL 60 RLVALGDRMA AVRRRIAASI SGESGPLSSS DIHSVSSEIS SAAHLVVLNA ASLLSSTVAS 120 LPAPPPPPAT TVQELPPVVV SVPQEPPQEA AKGDGDYDVV ELDASELLAE HVHFCDICGK 180 GFRRDANLRM HMRAHGDRFK TLDALSRPGQ PKPPAGREVR FSCPYAGCNR NRAHRRFRPL 240 KSAVCARNHF RRSHCPKLYA CERCGGKKRF AVLADLRSHL RHCGEEAQWR CSCGTTFSRK 300 DKLFGHLALF EGHTPAIAEP NKGVATAAAE ASISMMEEGG VEANCDREED EEGGFDPKFF 360 QEWMEELRGG VVAPNWSAPS EAGRLW

Sequence ? help Back to Top

Protein Sequence Length: 386 aa Download sequence

MKSTTHLLAG GGGGGSVAPP TAATAPTLAM EVGDPSGALV GGAGGAGAGG GDGDARDALL  60
RLVALGDRMA AVRRRIAASI SGESGPLSSS DIHSVSSEIS SAAHLVVLNA ASLLSSTVAS  120
LPAPPPPPAT TVQELPPVVV SVPQEPPQEA AKGDGDYDVV ELDASELLAE HVHFCDICGK  180
GFRRDANLRM HMRAHGDRFK TLDALSRPGQ PKPPAGREVR FSCPYAGCNR NRAHRRFRPL  240
KSAVCARNHF RRSHCPKLYA CERCGGKKRF AVLADLRSHL RHCGEEAQWR CSCGTTFSRK  300
DKLFGHLALF EGHTPAIAEP NKGVATAAAE ASISMMEEGG VEANCDREED EEGGFDPKFF  360
QEWMEELRGG VVAPNWSAPS EAGRLW

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34370.3	4e-70	C2H2 family protein

Link Out ? help Back to Top
Ensembl	ONIVA02G23610.1