PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA02G28000.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

TCP

Protein Properties

Length: 143aa MW: 15389.6 Da PI: 11.653

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA02G28000.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	111.4	1.3e-34	18	110	3	89
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt........ssssaseceaesssssasnsssg 88 +k+++++++hTkv+gR+RR+R++a+caa +F+L++eL ++++s+t++WLlqq +pai ++gt +s ++ +c + s s++++++ ONIVA02G28000.1 18 PKRSSNKDRHTKVDGRGRRIRMPALCAAWIFQLTRELDHKSNSETVQWLLQQVEPAIVTAMGTgvgtdiqgPSLPSPNC---ALSRSHHHHHHM 108 6999***********************************************************8888777645555556...333333333333 PP TCP 89 .k 89 + ONIVA02G28000.1 109 wA 110 31 PP

Sequence ? help Back to Top
Protein Sequence Length: 143 aa Download sequence
MQVVAAVTGK RRMQGLGPKR SSNKDRHTKV DGRGRRIRMP ALCAAWIFQL TRELDHKSNS 60 ETVQWLLQQV EPAIVTAMGT GVGTDIQGPS LPSPNCALSR SHHHHHHMWA AAAAPPAASA 120 AFAGATSGSR PCSPATWRQP CRG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27010.1	1e-34	TCP family protein

Link Out ? help Back to Top
Ensembl	ONIVA02G28000.1