PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA02G28400.1
Organism
Oryza sativa f. spontanea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family HD-ZIP
Protein Properties Length: 261aa    MW: 28481.3 Da    PI: 4.6582
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA02G28400.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.83.7e-1865118456
                      -SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   4 RttftkeqleeLeelFek.nrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      +++ft+eq++ Le+ F+    ++  +e++eLA++lgL+ rqV +WFqN+Ra+++
  ONIVA02G28400.1  65 KRRFTEEQVRSLETTFHArRAKLEPREKAELARELGLQPRQVAIWFQNKRARWR 118
                      458**************8899********************************9 PP
2HD-ZIP_I/II122.32.3e-3963156193
      HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeee.kLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                      e+krr+++eqv++LE++F++++ kLep++K+elareLglqprqva+WFqn+RAR+++kq+E+dy+aL+++ydal+++ e+L++e+ +L+++++e
  ONIVA02G28400.1  63 ERKRRFTEEQVRSLETTFHARRaKLEPREKAELARELGLQPRQVAIWFQNKRARWRSKQIEHDYAALRAQYDALHARVESLRQEKLALAAQVDE 156
                      69*****************9999******************************************************************99976 PP
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    
MESDCQFLVA PPQPHMYYDT AAAAVDEAQF LRQMVAAADH HAAAAGRGGG DGDGGGGGGG  60
GGERKRRFTE EQVRSLETTF HARRAKLEPR EKAELARELG LQPRQVAIWF QNKRARWRSK  120
QIEHDYAALR AQYDALHARV ESLRQEKLAL AAQVDELRGK LNERQDQSGS CDGGGAEGDD  180
DDKRNSVMNA SSSGLVEEDY VSCLAVPVVD VSEDGSAACG GSSYEYDHHL DYLGGGQLPD  240
PFCGMPDLWE TWPMVEWNAV A
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.11e-32HD-ZIP family protein