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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | ONIVA02G30660.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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| Family | bHLH | ||||||||
| Protein Properties | Length: 302aa MW: 31662 Da PI: 8.2175 | ||||||||
| Description | bHLH family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | HLH | 44.8 | 2.2e-14 | 116 | 167 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
+r++h ++Er+RR+ +N+ ++ Lr+l+P++ + ++ + a+++ A++Y+k+L+
ONIVA02G30660.1 116 QRMTHIAVERNRRRLMNDHLASLRSLIPSN---YIPRGDQATVVGGAIDYVKQLE 167
79****************************...9*******************96 PP
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| Sequence ? help Back to Top |
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| Protein Sequence Length: 302 aa Download sequence |
MEQWAAAAAA ADQAAASAGA GQMPFLALLQ GAMEADGGGG GDGRKRHAAA AAFASCCPCP 60 PVADLDLLES CVTQAAAPPV TAPATRAERR RKRPRPRPRA APPPEKRKKP EEAENQRMTH 120 IAVERNRRRL MNDHLASLRS LIPSNYIPRG DQATVVGGAI DYVKQLEQQL VALQAAAAER 180 SGVGVVATAA TAASDGVFVS PQYTSYSEAR GGSGVDVEAT AAVGGHVRVR VAGRRWTGRL 240 VRAVAAMEDL RLTVLHLAVT SVGHDAVVYC FNLKMEEGCE MATADEVATV VHQIFAYAGA 300 CC |
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 89 | 99 | RRRKRPRPRPR |
| 2 | 89 | 109 | RRRKRPRPRPRAAPPPEKRKK |
| 3 | 90 | 110 | RRRKRPRPRPRAAPPPEKRKK |
| 4 | 91 | 97 | RKRPRPR |
| 5 | 91 | 111 | RRRKRPRPRPRAAPPPEKRKK |
| 6 | 92 | 96 | KRPRP |
| 7 | 117 | 128 | RMTHIAVERNRR |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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| Hit ID | E-value | Description | ||||
| AT2G46810.1 | 3e-38 | bHLH family protein | ||||
| Link Out ? help Back to Top | |
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| Ensembl | ONIVA02G30660.1 |
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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