PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA02G33840.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

CO-like

Protein Properties

Length: 474aa MW: 51628.5 Da PI: 5.6335

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA02G33840.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	20.7	8.7e-07	71	112	5	40
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 C+ ++e++ +C+++ lC +C + H+ Ht++ ONIVA02G33840.1 71 LCDFCGEQRSMVYCRSDAASLCLSCDRNVHSAnalsrrHTRT 112 7*****************************657888888876 PP
2	zf-B_box	21.9	3.6e-07	114	156	5	41
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg.......Htvvp 41 C+++ +++ C + ++ lC++C ++H g H++++ ONIVA02G33840.1 114 LCDRCVGQPAAVRCLEENTSLCQNCDWNGH-GaassaagHKRQT 156 7*****************************.5588889998876 PP
3	CCT	64.2	4e-22	417	460	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R++al+RYkeK+k+RkF+KkirY+sRKa+A+ R+RvKGrFvk+ ONIVA02G33840.1 417 RDNALTRYKEKKKRRKFDKKIRYASRKARADVRKRVKGRFVKAG 460 899**************************************985 PP

Sequence ? help Back to Top
Protein Sequence Length: 474 aa Download sequence
MLSNSSGSFH GLYQYTYISP TLTKEWKQTH HYPGRIPLNS TVEQKARKVA VLVALSASGS 60 APVLYRTMDA LCDFCGEQRS MVYCRSDAAS LCLSCDRNVH SANALSRRHT RTLLCDRCVG 120 QPAAVRCLEE NTSLCQNCDW NGHGAASSAA GHKRQTINCY SGCPSSAELS RIWSFSMDIP 180 TVAAEPNCEE GINMMSINDN DVNNHCGAPE DGRLLDIAST VLMSDLPTGD KFKPLIGSSS 240 GDGMNLLPLN SDQPAEPVST TPKAPCVTDK DMFNDGSVYG DFCVDDADLT FENYEELFGT 300 SHVQTEQLFD DAGIDSYFEM KDVPADESNE QPKPVQPECS NVASVDSGMS NPAARADSSH 360 CIPGRQAISN ISLSFSGLTG ESSAGDFQDC GVSSMILMGE PPWHPPGPES SSAGGSRDNA 420 LTRYKEKKKR RKFDKKIRYA SRKARADVRK RVKGRFVKAG EAYDYDPLSQ TRSY

Sequence ? help Back to Top

Protein Sequence Length: 474 aa Download sequence

MLSNSSGSFH GLYQYTYISP TLTKEWKQTH HYPGRIPLNS TVEQKARKVA VLVALSASGS  60
APVLYRTMDA LCDFCGEQRS MVYCRSDAAS LCLSCDRNVH SANALSRRHT RTLLCDRCVG  120
QPAAVRCLEE NTSLCQNCDW NGHGAASSAA GHKRQTINCY SGCPSSAELS RIWSFSMDIP  180
TVAAEPNCEE GINMMSINDN DVNNHCGAPE DGRLLDIAST VLMSDLPTGD KFKPLIGSSS  240
GDGMNLLPLN SDQPAEPVST TPKAPCVTDK DMFNDGSVYG DFCVDDADLT FENYEELFGT  300
SHVQTEQLFD DAGIDSYFEM KDVPADESNE QPKPVQPECS NVASVDSGMS NPAARADSSH  360
CIPGRQAISN ISLSFSGLTG ESSAGDFQDC GVSSMILMGE PPWHPPGPES SSAGGSRDNA  420
LTRYKEKKKR RKFDKKIRYA SRKARADVRK RVKGRFVKAG EAYDYDPLSQ TRSY

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	427	431	KKKRR
2	427	432	KKKRRK
3	427	453	KKKRRKFDKKIRYASRKARADVRKRVK
4	428	454	KKKRRKFDKKIRYASRKARADVRKRVK
5	428	432	KKRRK
6	429	455	KKKRRKFDKKIRYASRKARADVRKRVK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07650.2	1e-94	CO-like family protein

Link Out ? help Back to Top
Ensembl	ONIVA02G33840.1