PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA02G33840.2

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

CO-like

Protein Properties

Length: 407aa MW: 44208 Da PI: 4.7741

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA02G33840.2	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	20.9	7.4e-07	4	45	5	40
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 C+ ++e++ +C+++ lC +C + H+ Ht++ ONIVA02G33840.2 4 LCDFCGEQRSMVYCRSDAASLCLSCDRNVHSAnalsrrHTRT 45 7*****************************657888889876 PP
2	zf-B_box	22.2	2.9e-07	47	89	5	41
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg.......Htvvp 41 C+++ +++ C + ++ lC++C ++H g H++++ ONIVA02G33840.2 47 LCDRCVGQPAAVRCLEENTSLCQNCDWNGH-GaassaagHKRQT 89 7*****************************.5588889998876 PP
3	CCT	64.5	3.2e-22	350	393	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R++al+RYkeK+k+RkF+KkirY+sRKa+A+ R+RvKGrFvk+ ONIVA02G33840.2 350 RDNALTRYKEKKKRRKFDKKIRYASRKARADVRKRVKGRFVKAG 393 899**************************************985 PP

Sequence ? help Back to Top
Protein Sequence Length: 407 aa Download sequence
MDALCDFCGE QRSMVYCRSD AASLCLSCDR NVHSANALSR RHTRTLLCDR CVGQPAAVRC 60 LEENTSLCQN CDWNGHGAAS SAAGHKRQTI NCYSGCPSSA ELSRIWSFSM DIPTVAAEPN 120 CEEGINMMSI NDNDVNNHCG APEDGRLLDI ASTVLMSDLP TGDKFKPLIG SSSGDGMNLL 180 PLNSDQPAEP VSTTPKAPCV TDKDMFNDGS VYGDFCVDDA DLTFENYEEL FGTSHVQTEQ 240 LFDDAGIDSY FEMKDVPADE SNEQPKPVQP ECSNVASVDS GMSNPAARAD SSHCIPGRQA 300 ISNISLSFSG LTGESSAGDF QDCGVSSMIL MGEPPWHPPG PESSSAGGSR DNALTRYKEK 360 KKRRKFDKKI RYASRKARAD VRKRVKGRFV KAGEAYDYDP LSQTRSY

Sequence ? help Back to Top

Protein Sequence Length: 407 aa Download sequence

MDALCDFCGE QRSMVYCRSD AASLCLSCDR NVHSANALSR RHTRTLLCDR CVGQPAAVRC  60
LEENTSLCQN CDWNGHGAAS SAAGHKRQTI NCYSGCPSSA ELSRIWSFSM DIPTVAAEPN  120
CEEGINMMSI NDNDVNNHCG APEDGRLLDI ASTVLMSDLP TGDKFKPLIG SSSGDGMNLL  180
PLNSDQPAEP VSTTPKAPCV TDKDMFNDGS VYGDFCVDDA DLTFENYEEL FGTSHVQTEQ  240
LFDDAGIDSY FEMKDVPADE SNEQPKPVQP ECSNVASVDS GMSNPAARAD SSHCIPGRQA  300
ISNISLSFSG LTGESSAGDF QDCGVSSMIL MGEPPWHPPG PESSSAGGSR DNALTRYKEK  360
KKRRKFDKKI RYASRKARAD VRKRVKGRFV KAGEAYDYDP LSQTRSY

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	360	364	KKKRR
2	360	365	KKKRRK
3	360	386	KKKRRKFDKKIRYASRKARADVRKRVK
4	361	387	KKKRRKFDKKIRYASRKARADVRKRVK
5	361	365	KKRRK
6	362	388	KKKRRKFDKKIRYASRKARADVRKRVK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07650.2	1e-95	CO-like family protein

Link Out ? help Back to Top
Ensembl	ONIVA02G33840.2