PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA02G33840.5

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

CO-like

Protein Properties

Length: 466aa MW: 50867.9 Da PI: 5.205

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA02G33840.5	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	20.7	8.5e-07	63	104	5	40
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 C+ ++e++ +C+++ lC +C + H+ Ht++ ONIVA02G33840.5 63 LCDFCGEQRSMVYCRSDAASLCLSCDRNVHSAnalsrrHTRT 104 7*****************************657888888876 PP
2	zf-B_box	22	3.5e-07	106	148	5	41
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg.......Htvvp 41 C+++ +++ C + ++ lC++C ++H g H++++ ONIVA02G33840.5 106 LCDRCVGQPAAVRCLEENTSLCQNCDWNGH-GaassaagHKRQT 148 7*****************************.5588889998876 PP
3	CCT	64.2	3.9e-22	409	452	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R++al+RYkeK+k+RkF+KkirY+sRKa+A+ R+RvKGrFvk+ ONIVA02G33840.5 409 RDNALTRYKEKKKRRKFDKKIRYASRKARADVRKRVKGRFVKAG 452 899**************************************985 PP

Sequence ? help Back to Top
Protein Sequence Length: 466 aa Download sequence
MFNYKFVVLL LVTDFCFWLF AHQYPGRIPL NSTVEQKARK VAVLVALSAS GSAPVLYRTM 60 DALCDFCGEQ RSMVYCRSDA ASLCLSCDRN VHSANALSRR HTRTLLCDRC VGQPAAVRCL 120 EENTSLCQNC DWNGHGAASS AAGHKRQTIN CYSGCPSSAE LSRIWSFSMD IPTVAAEPNC 180 EEGINMMSIN DNDVNNHCGA PEDGRLLDIA STVLMSDLPT GDKFKPLIGS SSGDGMNLLP 240 LNSDQPAEPV STTPKAPCVT DKDMFNDGSV YGDFCVDDAD LTFENYEELF GTSHVQTEQL 300 FDDAGIDSYF EMKDVPADES NEQPKPVQPE CSNVASVDSG MSNPAARADS SHCIPGRQAI 360 SNISLSFSGL TGESSAGDFQ DCGVSSMILM GEPPWHPPGP ESSSAGGSRD NALTRYKEKK 420 KRRKFDKKIR YASRKARADV RKRVKGRFVK AGEAYDYDPL SQTRSY

Sequence ? help Back to Top

Protein Sequence Length: 466 aa Download sequence

MFNYKFVVLL LVTDFCFWLF AHQYPGRIPL NSTVEQKARK VAVLVALSAS GSAPVLYRTM  60
DALCDFCGEQ RSMVYCRSDA ASLCLSCDRN VHSANALSRR HTRTLLCDRC VGQPAAVRCL  120
EENTSLCQNC DWNGHGAASS AAGHKRQTIN CYSGCPSSAE LSRIWSFSMD IPTVAAEPNC  180
EEGINMMSIN DNDVNNHCGA PEDGRLLDIA STVLMSDLPT GDKFKPLIGS SSGDGMNLLP  240
LNSDQPAEPV STTPKAPCVT DKDMFNDGSV YGDFCVDDAD LTFENYEELF GTSHVQTEQL  300
FDDAGIDSYF EMKDVPADES NEQPKPVQPE CSNVASVDSG MSNPAARADS SHCIPGRQAI  360
SNISLSFSGL TGESSAGDFQ DCGVSSMILM GEPPWHPPGP ESSSAGGSRD NALTRYKEKK  420
KRRKFDKKIR YASRKARADV RKRVKGRFVK AGEAYDYDPL SQTRSY

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	419	423	KKKRR
2	419	424	KKKRRK
3	419	445	KKKRRKFDKKIRYASRKARADVRKRVK
4	420	446	KKKRRKFDKKIRYASRKARADVRKRVK
5	420	424	KKRRK
6	421	447	KKKRRKFDKKIRYASRKARADVRKRVK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07650.2	1e-94	CO-like family protein

Link Out ? help Back to Top
Ensembl	ONIVA02G33840.5