PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA02G34790.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

MIKC_MADS

Protein Properties

Length: 228aa MW: 25743.3 Da PI: 9.9198

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA02G34790.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	90.5	8.7e-29	10	59	2	51
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 ri+n++ rqvtfskRrng+lKKA+ELS+LCdaev +++fsstg+lye+ss ONIVA02G34790.1 10 RIDNSTSRQVTFSKRRNGLLKKAKELSILCDAEVGLVVFSSTGRLYEFSS 59 8***********************************************96 PP
2	K-box	61.5	3.4e-21	80	170	9	99
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 +++++ + +q+e+a L+++++nLq+++++l+Ge+L+ L +++Lq Le++Le sl++iR +K l++++ el + + +++++ +L +kl+ ONIVA02G34790.1 80 NATSEIKIWQREAASLRQQLHNLQESHKQLMGEELSGLGVRDLQGLENRLEISLRNIRMRKGSLIHQENIELSRSLNVMSQQKLELYNKLQ 170 56788999************************************************************99999999999999999999886 PP

Sequence ? help Back to Top
Protein Sequence Length: 228 aa Download sequence
MGRGKIVIRR IDNSTSRQVT FSKRRNGLLK KAKELSILCD AEVGLVVFSS TGRLYEFSST 60 NMKTVIDRYT NAKEELLGGN ATSEIKIWQR EAASLRQQLH NLQESHKQLM GEELSGLGVR 120 DLQGLENRLE ISLRNIRMRK GSLIHQENIE LSRSLNVMSQ QKLELYNKLQ ACEQRGATDA 180 NESSSTPYSF RIIQNANMPP SLELSQSQQR EGECSKTAAP ELGRLHLP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57230.1	1e-82	MIKC_MADS family protein

Link Out ? help Back to Top
Ensembl	ONIVA02G34790.1