PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA02G37880.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

bHLH

Protein Properties

Length: 409aa MW: 40804.9 Da PI: 5.9908

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA02G37880.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.2	5.5e-12	222	267	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR+ri +++ L+el+P+a K +Ka++L + ++Y+k Lq ONIVA02G37880.1 222 HSIAERLRRERIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 267 99*********************8.....6****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 409 aa Download sequence
MQPNARQMHD GGGGGGGGQD DFFDQMLSTL PAVWSELGSG KPAWDLTAGA VGGGGGASDD 60 HSAAAFDDSA LLASRLRQHQ IDGGGDKPIM LQLSDLHRHH GLAAGDDSGG AAGFLPLSLF 120 ADRSQDDIDA AFKSPNGARG DHALYNGFGA AGMHGAAAMQ PPPFGQGGSM PAQSFGGGAA 180 ASGGGGGSAS AAAAAGASSG GGAAAPPRQR QRARRGQATD PHSIAERLRR ERIAERMKAL 240 QELVPNANKT DKASMLDEII DYVKFLQLQV KVLSMSRLGG ASAVAPLVAN MSSESNGNGN 300 ATSSSGNGEA ANGSSNGDNN GGGTLRVTEQ QVAKLMEEDM GSAMQYLQGK GLCLMPISLA 360 TAISSATSSS LLPRTGGGAG GSLHEGGNGT SPPLVNGTAT GCDDAGRKQ

Sequence ? help Back to Top

Protein Sequence Length: 409 aa Download sequence

MQPNARQMHD GGGGGGGGQD DFFDQMLSTL PAVWSELGSG KPAWDLTAGA VGGGGGASDD  60
HSAAAFDDSA LLASRLRQHQ IDGGGDKPIM LQLSDLHRHH GLAAGDDSGG AAGFLPLSLF  120
ADRSQDDIDA AFKSPNGARG DHALYNGFGA AGMHGAAAMQ PPPFGQGGSM PAQSFGGGAA  180
ASGGGGGSAS AAAAAGASSG GGAAAPPRQR QRARRGQATD PHSIAERLRR ERIAERMKAL  240
QELVPNANKT DKASMLDEII DYVKFLQLQV KVLSMSRLGG ASAVAPLVAN MSSESNGNGN  300
ATSSSGNGEA ANGSSNGDNN GGGTLRVTEQ QVAKLMEEDM GSAMQYLQGK GLCLMPISLA  360
TAISSATSSS LLPRTGGGAG GSLHEGGNGT SPPLVNGTAT GCDDAGRKQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	227	232	RLRRER

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58010.1	6e-41	bHLH family protein

Link Out ? help Back to Top
Ensembl	ONIVA02G37880.1