PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA02G39270.1
Organism
Oryza sativa f. spontanea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 292aa    MW: 31696.6 Da    PI: 6.7829
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA02G39270.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.53.6e-11127174355
                      HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      + h ++Er+RR+++ + f  L +++P +     kK +K++ L  +++Y+k+L+
  ONIVA02G39270.1 127 QEHVIAERKRREKLQQQFVALATIVPGL-----KKTDKISLLGSTIDYVKQLE 174
                      5799************************.....9*****************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    
MYHQEEHARM QEQFAGTPLV EQPVRFDQFY PASMAPNQFH PSHCSSFPAF GGSSALPSLA  60
FGAVATTKKE QVQQPSPSSS NVLSFAGQVQ GSTTTLDFSG RGWQQDDGVG VFQQPPERRS  120
RPPANAQEHV IAERKRREKL QQQFVALATI VPGLKKTDKI SLLGSTIDYV KQLEEKVKAL  180
EEGSRRTAEP TTAFESKCRI TVDDDDGGSA SSGTDDGSSS SSSPTVEASI HGSTVLLKIC  240
CKERRGLLVM ILSELEKQGL SIINTSVVPF TDSCLNITIT AKARLALPVY YS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1133138ERKRRE
2134139RKRREK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.12e-30bHLH family protein