PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA03G10440.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

C2H2

Protein Properties

Length: 240aa MW: 24529 Da PI: 7.2531

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA03G10440.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.4	0.00023	80	102	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F ++ L H++ H ONIVA03G10440.1 80 FTCNYCQRKFFSSQALGGHQNAH 102 89*****************9988 PP

Sequence ? help Back to Top
Protein Sequence Length: 240 aa Download sequence
MKSSSQEAGE EVSEISSQAA SNNNETCNSS SGKVSLDLSL TVAAAAAAAA SATESSTTDS 60 GGTRPAATAT ATAREPARVF TCNYCQRKFF SSQALGGHQN AHRRERTLAR RAVRLDAFPY 120 GYADVASLPL YGAGLYPIGI QAHASVHHHH PGVAAPAGRA ELRSARALLG PMPFFVQAAG 180 DEDASFGWPG SFRPPPTAAT TIPAAAAAPV AVNSGSSNSN HGGSVVVQAA ADEPDLTLRL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66140.1	2e-11	C2H2 family protein

Link Out ? help Back to Top
Ensembl	ONIVA03G10440.1