PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA03G11500.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

M-type_MADS

Protein Properties

Length: 158aa MW: 17354.8 Da PI: 9.9128

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA03G11500.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	42.9	6.1e-14	20	57	6	43
HHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 6 ksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43 k r fskR ++i+ KA+EL +LC++ vav+ +s++ ONIVA03G11500.1 20 KKVRDACFSKRHTTIFNKANELAILCGVMVAVVFVSPN 57 6678999*****************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 158 aa Download sequence
MVKCRARTTR KKIEIKRGDK KVRDACFSKR HTTIFNKANE LAILCGVMVA VVFVSPNANG 60 GIFSFGYPSV SSVANRFLAN APNNTSVSSS TQSGRDVEIH ELEREERELK EHLQASTDQN 120 KLLQEAIAAR DGGQLMLLLQ SDCSELGPKG LVRGGTKY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60440.1	2e-13	M-type_MADS family protein

Link Out ? help Back to Top
Ensembl	ONIVA03G11500.1