PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA03G14960.1
Organism
Oryza sativa f. spontanea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family Trihelix
Protein Properties Length: 255aa    MW: 27438.1 Da    PI: 10.3418
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA03G14960.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix25.92.6e-082194270
         trihelix  2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekk 70
                     W++ e+ aL++a   ++ r   g l+ ++W++ ++++     +++   r+  qCk++++ l+kr k+++ ++k+
  ONIVA03G14960.1 21 WSDGETSALLDAWGPRHIRAAGGPLRTADWRACAAAVtarraAAGRAPRTVDQCKNRLDYLKKRLKAERSRSKG 94
                     *************************************9999888889********************9998876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    
MATRRRAAAP PQPPAWTPEP WSDGETSALL DAWGPRHIRA AGGPLRTADW RACAAAVTAR  60
RAAAGRAPRT VDQCKNRLDY LKKRLKAERS RSKGAPAPPP PPPSVDRLRA LLRLAPSVPP  120
GFTSRGGAMP KVGEEEQEEE EEKAESFAAP LPRSWPSVPK RPRTAVALLP LSSSSGHQHG  180
DGGGTPCTEV AAALDRLAGT YERVEVAKQK EATRLEERRL EAMRDLEIER MRILVDVAIS  240
ASAVADTATA ASSSW