PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA03G15980.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

AP2

Protein Properties

Length: 455aa MW: 49180.3 Da PI: 8.4386

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA03G15980.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	50	7.2e-16	261	313	1	56
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 s y+GV+++++ grW A+I + +k +lg+f t+eeAa+a++ a++k++g+ ONIVA03G15980.1 261 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFATEEEAAEAYDVAALKFRGA 313 57**************988532...5***********************985 PP

Sequence ? help Back to Top
Protein Sequence Length: 455 aa Download sequence
MSPPTNGAIS LAFPPMGPLP ADALIYPFDG LSYDDFVLPV AAAPQHPLPV AVADPAPLLL 60 LPPPSSCTCN GASSGMGAVA PRTLALGATT DGSVMTPTSW GSDGGGGGSS SARAVRSPSP 120 VLPLVQGTGQ RTSCYRGVTR HRWTGRYEAH LWDNTCRREG QKRKGRQVQW FLFFFLRKDY 180 QWFHDSDTMT CCFFAFSGYD IEDKAARAYD LAALKYWGAS ATTNFPKESY VKEIEEMQKM 240 SKQELVASLR RKSSGFSRGA SIYRGVTRHH QHGRWQARIG RVAGNKDLYL GTFATEEEAA 300 EAYDVAALKF RGANAVTNFE PSRYNLEAIS QSDLPISVSG RRHNSSSNSN NPAPEAGGQI 360 TLMSSPPISQ QSSSAPPYLI HNLLQFQPCG PPYAPPPPPP PPPPQALPLP GSYNFAEPVG 420 FYWPYGDGEE QKVQLNSNMV GMASGGFLRL ANAAN

Sequence ? help Back to Top

Protein Sequence Length: 455 aa Download sequence

MSPPTNGAIS LAFPPMGPLP ADALIYPFDG LSYDDFVLPV AAAPQHPLPV AVADPAPLLL  60
LPPPSSCTCN GASSGMGAVA PRTLALGATT DGSVMTPTSW GSDGGGGGSS SARAVRSPSP  120
VLPLVQGTGQ RTSCYRGVTR HRWTGRYEAH LWDNTCRREG QKRKGRQVQW FLFFFLRKDY  180
QWFHDSDTMT CCFFAFSGYD IEDKAARAYD LAALKYWGAS ATTNFPKESY VKEIEEMQKM  240
SKQELVASLR RKSSGFSRGA SIYRGVTRHH QHGRWQARIG RVAGNKDLYL GTFATEEEAA  300
EAYDVAALKF RGANAVTNFE PSRYNLEAIS QSDLPISVSG RRHNSSSNSN NPAPEAGGQI  360
TLMSSPPISQ QSSSAPPYLI HNLLQFQPCG PPYAPPPPPP PPPPQALPLP GSYNFAEPVG  420
FYWPYGDGEE QKVQLNSNMV GMASGGFLRL ANAAN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G10510.3	3e-92	AP2 family protein

Link Out ? help Back to Top
Ensembl	ONIVA03G15980.1