PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA03G20030.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

bHLH

Protein Properties

Length: 252aa MW: 27918.5 Da PI: 5.7676

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA03G20030.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	13.6	0.00013	37	86	1	54
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r++ ++erE+ R ++N+ f eL +l + + + Ka iL+ +++ +++L ONIVA03G20030.1 37 RKVHKSEREKLKRGHLNDLFGELGNMLEAD----RQSNGKACILTDTTRILRDL 86 678899*********************997....57788899999888888776 PP

Sequence ? help Back to Top
Protein Sequence Length: 252 aa Download sequence
MVPSERGDVA TAIRPAAADK LVHGPISDKK CRKKVPRKVH KSEREKLKRG HLNDLFGELG 60 NMLEADRQSN GKACILTDTT RILRDLLSQV KSLRQENSTL QNESNYVTME RNELQDENGV 120 LRSEISDLQN ELRMRATGSP GWGHGATGSP LPVPPSPGTV FPSQQPMQPS PMTTSTVFPL 180 QQPLPQPTVI EPSARQPLEL KLFLEAPPAE DPEPSEDQEA PNNVARPQPR YPTEASSWPI 240 SLGLPRMEDE QM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47640.2	2e-29	bHLH family protein

Link Out ? help Back to Top
Ensembl	ONIVA03G20030.1