PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA03G23070.1
Organism
Oryza sativa f. spontanea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family GRAS
Protein Properties Length: 523aa    MW: 54040.7 Da    PI: 6.6528
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA03G23070.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS181.84.8e-561345202374
             GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetsekn......sseelaal.kl.... 83 
                      ++lL  cA av++g+l+++q+l   l el s +gd+++Rlaa+ ++ALa+ l    ++  ++a+++ + se+                +l    
  ONIVA03G23070.1 134 EQLLNPCAVAVEAGNLSRVQHLFYVLGELESFSGDANHRLAAHGLRALARWLPAaVGPAAAAAVRVPPCSERPtpafaaA------EpRLfras 221
                      689*************************************************9867777777776555554443334321......22112335 PP

             GRAS  84 ...fsevsPilkfshltaNqaIleavege......ervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesg........skeel 158
                         f+evsP++ + + +aN aI +a          + +H++D+++s+G+QWp+Ll++L+ +p  +  ps+R+T+vg+ ++          +   
  ONIVA03G23070.1 222 lirFHEVSPWFALPNALANAAIAQASTCGaagatpRPLHVVDLGVSHGVQWPTLLESLTRQPggRALPSVRLTVVGPGATAtspaapfsASPPG 315
                      589*********************96533345567889************************544579********987778899999878888 PP

             GRAS 159 eetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe.....ad 247
                            L ++A++++++++++   a++l+d        + gEal+V+l+++l +        ++er+evL+  ++l+P++vv++e +     + 
  ONIVA03G23070.1 316 YDFSPHLLRYAKSINLDLRISR--ASTLDDA----VPGDDGEALVVCLQFRLGHAA------AEERREVLRKARGLNPELVVLSELDsgvgvVG 397
                      99999****************8..6777776....66789**********999997......445899******************94433222 PP

             GRAS 248 hnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklll 341
                       +++  + +f+  le  + +++s++a +    + + + Er+ll+ e+  ++a++  +  +  e  e Wrer+ +aGF+++p++ +a+++a++ll
  ONIVA03G23070.1 398 GDGGIAAGEFAARLELLWRFLESTSAAF----KGKDVEERRLLEAEAGAILAAADVA--AAGEGREGWRERMAAAGFEEAPFGAEAVESARSLL 485
                      234467889***************9997....6777788888888899999998887..788999***************************** PP

             GRAS 342 rkvk.sdgyrveeesgslv.lgWkdrpLvsvSaWr 374
                      rk++ +++++  +  +++v l Wk++p+ ++S Wr
  ONIVA03G23070.1 486 RKYDsGWEMSAPSPAAAAVaLRWKGQPVSFCSLWR 520
                      ****6555666666666667**************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 523 aa     Download sequence    
MSYHGQERHG GNGLDWFEES MSSLLAADVD LAGGGGDAGG GGYAWWWAAS PAAQQDDIGS  60
VVAQTLSPPS TAAPAAASPS IASPAASSPP DVPSSSSKKR KSPAHRAPGH TGGKKGGGGK  120
GGGGGSDRDM RWAEQLLNPC AVAVEAGNLS RVQHLFYVLG ELESFSGDAN HRLAAHGLRA  180
LARWLPAAVG PAAAAAVRVP PCSERPTPAF AAAEPRLFRA SLIRFHEVSP WFALPNALAN  240
AAIAQASTCG AAGATPRPLH VVDLGVSHGV QWPTLLESLT RQPGGRALPS VRLTVVGPGA  300
TATSPAAPFS ASPPGYDFSP HLLRYAKSIN LDLRISRAST LDDAVPGDDG EALVVCLQFR  360
LGHAAAEERR EVLRKARGLN PELVVLSELD SGVGVVGGDG GIAAGEFAAR LELLWRFLES  420
TSAAFKGKDV EERRLLEAEA GAILAAADVA AAGEGREGWR ERMAAAGFEE APFGAEAVES  480
ARSLLRKYDS GWEMSAPSPA AAAVALRWKG QPVSFCSLWR PAA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1112119GGKKGGGG
2116123GGKKGGGG
3117124GGKKGGGG
4118125GGKKGGGG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13840.17e-52GRAS family protein