PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA03G24370.1
Organism
Oryza sativa f. spontanea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family LBD
Protein Properties Length: 204aa    MW: 21083.2 Da    PI: 8.0868
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA03G24370.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26096.62.5e-302103197
           DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 
                      +C++C+vlr++C+++Cvl+p++     +++q +++ +v+k+FG++ +l++++a+pe +r+++++sl+yeA  r+ +Pv+Gavg+++++++ l+q
  ONIVA03G24370.1   2 SCNGCRVLRKGCSDGCVLRPCLqwidaADAQGHATVFVAKFFGRAGLLSFISAVPEAQRPALFQSLLYEAAGRTINPVHGAVGLLWTGNWPLCQ 95 
                      6*********************9998656778************************************************************** PP

           DUF260  90 lkaelall 97 
                      +++e++l+
  ONIVA03G24370.1  96 AAVETVLR 103
                      **999876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    
MSCNGCRVLR KGCSDGCVLR PCLQWIDAAD AQGHATVFVA KFFGRAGLLS FISAVPEAQR  60
PALFQSLLYE AAGRTINPVH GAVGLLWTGN WPLCQAAVET VLRGGAIGPL PELGGACGGA  120
GGDLYGAAKR NGGWSTFSTA KRVRKAEVPE APSCDLGLCL SPCSPPAVGE RKPALRPGTP  180
SMSSDESGTT TGGERDPVLL NLFV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67420.18e-70LBD family protein