PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA03G25450.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

M-type_MADS

Protein Properties

Length: 137aa MW: 15582 Da PI: 8.6985

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA03G25450.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	37.2	3.8e-12	2	31	13	42
HHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 13 fskRrngilKKAeELSvLCdaevaviifss 42 f kR++ ++KKA+ELS+L +++++v+++++ ONIVA03G25450.1 2 FKKRQKSLMKKASELSTLYGVDACVVMYAE 31 89**************************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 137 aa Download sequence
MFKKRQKSLM KKASELSTLY GVDACVVMYA EGEAQPMMVW PSVPEARRVI ERFRALPQKD 60 KYKNTTNLEG FLKQRIANLQ EKVDKAKHEN DELETKLLLL NSLDGCLPSL VGLTVKQITT 120 PQEASWEWSP GDTSPNQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G27810.1	8e-17	M-type_MADS family protein

Link Out ? help Back to Top
Ensembl	ONIVA03G25450.1