PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA03G25700.1
Organism
Oryza sativa f. spontanea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family M-type_MADS
Protein Properties Length: 249aa    MW: 27541.9 Da    PI: 9.9342
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA03G25700.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF51.31.5e-161050242
                     ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
           SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                     ri n+ +r  tf kR++g++KKA+EL +LC ++ +++++++
  ONIVA03G25700.1 10 RIINDAKRRATFKKRLKGLMKKASELATLCSVDTCLMVYGE 50
                     899************************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    
MARNKVKLQR IINDAKRRAT FKKRLKGLMK KASELATLCS VDTCLMVYGE GEAQATVVWP  60
SESEVMRVLE RFKALPQLDK YKKMTDLEGF IQERIDKLQE QLDKVRRDAD ESETKLLLIE  120
ALEGRRPGLE GITIEQLTSL GWLVDARLNI VNDQLQKLHE QGLLPAPVSL PTMGVLPYTT  180
AGYTVAQEAP IQRGGWLMGV VRGIGSLGYS LFRRSGRSNT AGPSGDMVQP FNIGAGSSLA  240
NQGISFPPK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.11e-30M-type_MADS family protein