PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA03G28270.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

bHLH

Protein Properties

Length: 456aa MW: 48367.2 Da PI: 6.9712

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA03G28270.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	52.9	6.5e-17	326	372	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L+el+P++ K +Ka++L +A+eY+ksLq ONIVA03G28270.1 326 VHNLSERRRRDRINEKMRALQELIPHC-----NKTDKASMLDEAIEYLKSLQ 372 6***********************8.....6****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 456 aa Download sequence
MNQFVPDWSN MGDASRTLGE DDNLIELLWC NGHVVMQSQN HHRKLPPRPP EKAAAAAAAA 60 AVQEDEAGLW FPFALADSLE KDIFSDLFYE APVAATAAAA PAGPGAGADG EGKTCKGDAA 120 MAEEERGGPG AASEAPRELM PPPKSTHASC SRQQTMSLAD GGDNAGDLSE LVRARRSSGG 180 AVRRKAEAGG GGGGASSSML SAIGSSICGS NQVQVQQRTA SEPGRRGAPP SAVGSANAIP 240 CGGRDHGHGH EATTVASSSG RSNCCFGTNT TTEPTSTSNR SSKRKRLDTT EDSESPSEDA 300 ESESAALARK PPAKMTTARR SRAAEVHNLS ERRRRDRINE KMRALQELIP HCNKTDKASM 360 LDEAIEYLKS LQLQLQMMWM GSGMAPPVMF PGVHQYLPRM GVGMGAAAAA MPRMPEWGII 420 RWGPRPCSSS KIHHFTCQME ALCLLLKMHP TQDQDN

Sequence ? help Back to Top

Protein Sequence Length: 456 aa Download sequence

MNQFVPDWSN MGDASRTLGE DDNLIELLWC NGHVVMQSQN HHRKLPPRPP EKAAAAAAAA  60
AVQEDEAGLW FPFALADSLE KDIFSDLFYE APVAATAAAA PAGPGAGADG EGKTCKGDAA  120
MAEEERGGPG AASEAPRELM PPPKSTHASC SRQQTMSLAD GGDNAGDLSE LVRARRSSGG  180
AVRRKAEAGG GGGGASSSML SAIGSSICGS NQVQVQQRTA SEPGRRGAPP SAVGSANAIP  240
CGGRDHGHGH EATTVASSSG RSNCCFGTNT TTEPTSTSNR SSKRKRLDTT EDSESPSEDA  300
ESESAALARK PPAKMTTARR SRAAEVHNLS ERRRRDRINE KMRALQELIP HCNKTDKASM  360
LDEAIEYLKS LQLQLQMMWM GSGMAPPVMF PGVHQYLPRM GVGMGAAAAA MPRMPEWGII  420
RWGPRPCSSS KIHHFTCQME ALCLLLKMHP TQDQDN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	331	336	ERRRRD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09530.2	1e-33	bHLH family protein

Link Out ? help Back to Top
Ensembl	ONIVA03G28270.1