PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA03G28530.1
Organism
Oryza sativa f. spontanea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family NF-YA
Protein Properties Length: 333aa    MW: 35010.1 Da    PI: 9.5696
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA03G28530.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA96.13.8e-30149205158
        CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                      d+p+YVNaKQy++Il+RR +Rak+++e++l  k+rkpylheSRh+hA+rR+RgsgGrF
  ONIVA03G28530.1 149 DAPIYVNAKQYEGILRRRRARAKAQRENRL-VKGRKPYLHESRHRHAMRRARGSGGRF 205
                      68****************************.**************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    
MLSFKQSHEG FGHVAAAGAG PQQQQQPWWA GSQLLYGEAS PEEAALRDGG QFQVVPGGRA  60
ALDPAAPEPE KTAVPAMPKR GGGGAPEVLK FSVFSGNLEP GDTGEKNREH SATIAMQSPL  120
PEYNGHFELG LGQSMSGGRM LLPLNAPADA PIYVNAKQYE GILRRRRARA KAQRENRLVK  180
GRKPYLHESR HRHAMRRARG SGGRFLNTKK EATAAGCGGS SKTPLASLVS PADVAHRPGS  240
RGGGGRASSL SGSDVSSPGG GMYDHHRHDD ADAVDHYNSI DHHLRTPFFT PLPIIMDSGG  300
GGGDHASHSA AAVAAPFRWA TAAGDGCCEL LKA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1190199RHRHAMRRAR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14020.13e-22NF-YA family protein