PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA03G28660.2

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

YABBY

Protein Properties

Length: 258aa MW: 28883.1 Da PI: 11.2838

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA03G28660.2	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	119.1	7e-37	4	109	2	114
YABBY 2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesasts 95 +++ ++e+vCyv+CnfCntilavsvPs+s++++vtvrCGhCtsllsvnl+ +q+l+ae+h l+++lk++++++++n++++ s+s++ ONIVA03G28660.2 4 QIVPAPEHVCYVHCNFCNTILAVSVPSNSMLNIVTVRCGHCTSLLSVNLRGLVQALPAEDH--------LQDNLKMHNMSFRENYSEYGSSSRY 89 67889*****************************************************9........899****************** PP YABBY 96 vssekl.senedeevprvpp 114 ++ ++ s+n++e++ +v + ONIVA03G28660.2 90 GRVPMMfSKNDTEHMLHVRQ 109 9998899*****998765 PP
2	YABBY	124.8	1.2e-38	167	233	102	170
YABBY 102 senedeev.prvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 s ++++ + +r+p PPekrqrvPsaynrfikeei+rika+nPdishreafs+aaknWahfP+ihfgl ONIVA03G28660.2 167 SASSRRAArSRPP---PPPEKRQRVPSAYNRFIKEEIRRIKANNPDISHREAFSTAAKNWAHFPNIHFGL 233 3333333303334...59**************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 258 aa Download sequence
MSAQIVPAPE HVCYVHCNFC NTILAVSVPS NSMLNIVTVR CGHCTSLLSV NLRGLVQALP 60 AEDHLQDNLK MHNMSFRENY SEYGSSSRYG RVPMMFSKND TEHMLHVRQS PAAAARVRHR 120 PHVVVVVAPS PLSSSSLWSR CRRSRPPSLL SVASTARIRP VTRRAVSASS RRAARSRPPP 180 PPEKRQRVPS AYNRFIKEEI RRIKANNPDI SHREAFSTAA KNWAHFPNIH FGLGSHESSK 240 KLDEAIGAPS PQKVQRLY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08465.1	6e-24	YABBY family protein

Link Out ? help Back to Top
Ensembl	ONIVA03G28660.2