PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA03G29050.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

FAR1

Protein Properties

Length: 689aa MW: 72648 Da PI: 4.8613

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA03G29050.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	101.7	7e-32	83	184	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk............tekerrtraetrtgCkaklkvkkekdgkwevtklel 83 fYn YA++vGFs+r+s +++s+r+g+i++r+fvC keg+r+ + k+ + + rrtra+tr+gCka+++vkk+++g+w vtkle+ ONIVA03G29050.1 83 FYNVYAHRVGFSTRISVMHRSRRDGSIMSRQFVCAKEGFRTYRGKNevspvaagsgedSGRGRRTRAVTRVGCKAMIRVKKQDNGRWAVTKLET 176 ******************************************************99999***************************** PP FAR1 84 eHnHelap 91 HnH+l+p ONIVA03G29050.1 177 AHNHPLVP 184 ***986 PP

Sequence ? help Back to Top
Protein Sequence Length: 689 aa Download sequence
MERGGGGGGG GGGGVMGSEQ GTPESEMGDG DNDSVDYAAE MEADAAGNGS AAAAAYAARA 60 GVYDGVDPFE GMEFDDEEDA WTFYNVYAHR VGFSTRISVM HRSRRDGSIM SRQFVCAKEG 120 FRTYRGKNEV SPVAAGSGED SGRGRRTRAV TRVGCKAMIR VKKQDNGRWA VTKLETAHNH 180 PLVPPNQAHC LRPHKPLSEC GKQRQFGIPR NGGMLLAIEP PPPPISPPVP QTSELVNCIN 240 MPETIDEFEV NFKALISKVG PGNSEWLYSV YNCRQHWVPV YLRDTFFGDE SSKEDLCREA 300 LRYAEEGASS VEVYIVAMQA LQEAANKVNM AKRGIGQVAP NAPLAVMPIA AQLPAEGFRN 360 VPEISFNQRK KRKRNSNNKT TENSSNQLMY LQQPVNFLFV APGTSSGPQG PSQIVAAVPV 420 SSSAPHGQTS SANHPSDGNT TSCSVAAQKN SDLSNYSGSA PSLGNVVPEG EIKSSGFASQ 480 IKESHELSQG NGNKGNNVNM ASSTSSPQLV TVPVGLCLPS MDSSKISADA INSTNSGSMI 540 SNGNVSFGLC QSQSTNADPR STPEGSSIRA AAIAAGARIA SPSDAASIIK AAQSKGAIHI 600 RPGEGVPNYL KPLAPQPLSS LPPGSIPNSV HPSSSHAQPG QCSFGDSAAA KDAIFGSTDS 660 SDDDEYDEDD DTDDNDEDEG ITGDEVEQE

Sequence ? help Back to Top

Protein Sequence Length: 689 aa Download sequence

MERGGGGGGG GGGGVMGSEQ GTPESEMGDG DNDSVDYAAE MEADAAGNGS AAAAAYAARA  60
GVYDGVDPFE GMEFDDEEDA WTFYNVYAHR VGFSTRISVM HRSRRDGSIM SRQFVCAKEG  120
FRTYRGKNEV SPVAAGSGED SGRGRRTRAV TRVGCKAMIR VKKQDNGRWA VTKLETAHNH  180
PLVPPNQAHC LRPHKPLSEC GKQRQFGIPR NGGMLLAIEP PPPPISPPVP QTSELVNCIN  240
MPETIDEFEV NFKALISKVG PGNSEWLYSV YNCRQHWVPV YLRDTFFGDE SSKEDLCREA  300
LRYAEEGASS VEVYIVAMQA LQEAANKVNM AKRGIGQVAP NAPLAVMPIA AQLPAEGFRN  360
VPEISFNQRK KRKRNSNNKT TENSSNQLMY LQQPVNFLFV APGTSSGPQG PSQIVAAVPV  420
SSSAPHGQTS SANHPSDGNT TSCSVAAQKN SDLSNYSGSA PSLGNVVPEG EIKSSGFASQ  480
IKESHELSQG NGNKGNNVNM ASSTSSPQLV TVPVGLCLPS MDSSKISADA INSTNSGSMI  540
SNGNVSFGLC QSQSTNADPR STPEGSSIRA AAIAAGARIA SPSDAASIIK AAQSKGAIHI  600
RPGEGVPNYL KPLAPQPLSS LPPGSIPNSV HPSSSHAQPG QCSFGDSAAA KDAIFGSTDS  660
SDDDEYDEDD DTDDNDEDEG ITGDEVEQE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	369	374	RKKRKR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	5e-26	FAR1 family protein

Link Out ? help Back to Top
Ensembl	ONIVA03G29050.1