PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA03G29300.1
Organism
Oryza sativa f. spontanea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family LBD
Protein Properties Length: 212aa    MW: 21852.8 Da    PI: 9.0633
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA03G29300.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260140.36.4e-44411401100
           DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                      +CaaCk+lrr+Ca++Cv+apyfp  +p+kfanvhk+FGasnv+kll+++p ++r da+sslvyeA+ar+rdP+yG+vg i++lqqq+e l+a+l
  ONIVA03G29300.1  41 PCAACKLLRRRCAAGCVFAPYFPPGEPHKFANVHKVFGASNVSKLLQEIPVQHRGDAVSSLVYEANARVRDPIYGCVGAISSLQQQVEALQAQL 134
                      7********************************************************************************************* PP

           DUF260  95 allkee 100
                      al+++e
  ONIVA03G29300.1 135 ALAQAE 140
                      **9986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    
MRDVVVAVGG GTKAASRQQG QGGVTLAAAA AGSGSGSAAS PCAACKLLRR RCAAGCVFAP  60
YFPPGEPHKF ANVHKVFGAS NVSKLLQEIP VQHRGDAVSS LVYEANARVR DPIYGCVGAI  120
SSLQQQVEAL QAQLALAQAE MVRLRMSNDY IGRRLRARGG GGGGGGGSTT TTTGSPSSMS  180
SPAKTAEPEP LCKPTPELDM VVDQPDFGFW SY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31320.12e-35LBD family protein