PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA03G30270.1
Organism
Oryza sativa f. spontanea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 219aa    MW: 22522.8 Da    PI: 7.6715
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA03G30270.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.52.3e-08190216430
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC CS
              HLH   4 ahnerErrRRdriNsafeeLrellPka 30 
                       h ++Er+RR++iN++f eL +++P +
  ONIVA03G30270.1 190 EHIIAERKRREKINQRFIELSTVIPGL 216
                      699**********************75 PP
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    
MEDSSLFMEW AMETLQHLHP LPATPPPAGG GYAGDNATFP SLQALRESSV SQNGMAPPEP  60
TAHEGHRASN SWSSGDTDSV SGGGGGAVME HDGWSTSPNS VRCAAGGGGG GGGLWPVSWN  120
FSSAMTQPCN DQATPPNPPP TTRARYGGGG VRYLPAAVSP SPSAQTRRAS SKGNGGGGSG  180
SSSAAPYAQE HIIAERKRRE KINQRFIELS TVIPGLKKV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1195200ERKRRE
2196201RKRREK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.15e-10bHLH family protein