PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA03G35980.1
Organism
Oryza sativa f. spontanea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family M-type_MADS
Protein Properties Length: 197aa    MW: 22529.8 Da    PI: 9.7074
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA03G35980.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF97.17.5e-31959151
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
           SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                     krienk+nrqvtfskRr g+lKKA+E+SvLCdaeva+iifs++gklyey++
  ONIVA03G35980.1  9 KRIENKINRQVTFSKRRSGLLKKANEISVLCDAEVALIIFSTKGKLYEYAT 59
                     79***********************************************86 PP
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    
MGRGKVQLKR IENKINRQVT FSKRRSGLLK KANEISVLCD AEVALIIFST KGKLYEYATD  60
SCMDKILERY ERYSYAEKVL ISAESDTQGN WCHEYRKLKA KSQLMLESIN ELQRKNPCSF  120
LQLVEKQKVQ KQQVQWDQTQ PQTSSSSSSF MMREALPTTN ISNYPAAAGE RIEDVAAGQP  180
QHVRIGLPPW MLSHING
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69120.14e-56MIKC_MADS family protein