PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA03G39530.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

AP2

Protein Properties

Length: 443aa MW: 49159.8 Da PI: 4.5423

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA03G39530.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	38.8	2.3e-12	80	137	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng.kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d ++ ++ k+ + g ++++e Aa+a++ a++k++g ONIVA03G39530.1 80 SIYRGVTRHRWTGRFEAHLWDkNCSTSlQNkKKGRQGAYDSEEAAARAYDLAALKYWG 137 57***************99554433744577777******************98 PP
2	AP2	55.8	1.1e-17	180	232	1	56
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 s+y+GV +++ +grW+A+I + +k+ +lg+f+t eeAaka++ a+ +++g+ ONIVA03G39530.1 180 SKYRGVARHHHNGRWEARIGRVLG---NKYLYLGTFDTQEEAAKAYDLAAIEYRGA 232 89**99******988422...5***********************995 PP

Sequence ? help Back to Top
Protein Sequence Length: 443 aa Download sequence
MAKRSSPDPA SSSPSASSSP SSPSSSSSED SSSPMSMPCK RRARPRTDKS TGKAKRPKKE 60 SKEVVDPSSN GGGGGGKRSS IYRGVTRHRW TGRFEAHLWD KNCSTSLQNK KKGRQGAYDS 120 EEAAARAYDL AALKYWGPET VLNFPLEEYE KERSEMEGVS REEYLASLRR RSSGFSRGVS 180 KYRGVARHHH NGRWEARIGR VLGNKYLYLG TFDTQEEAAK AYDLAAIEYR GANAVTNFDI 240 SCYLDQPQLL AQLQQEPQLL AQLQQEPQVV PALHEEPQDD DRSENAVQEL SSSEANTSSD 300 NNEPLAADDS AECTNEPLPI VDGIEESLWS PCLDYELDTM PGAYFSNSMN FSEWFNDEAF 360 EGGMEYLFEG CSSITEGGNS MDNSGVAEHN LFEECNMLED ISDFLDKDIS DFLDKDISIS 420 DRERISPQAN NISCPQKMIS VCN

Sequence ? help Back to Top

Protein Sequence Length: 443 aa Download sequence

MAKRSSPDPA SSSPSASSSP SSPSSSSSED SSSPMSMPCK RRARPRTDKS TGKAKRPKKE  60
SKEVVDPSSN GGGGGGKRSS IYRGVTRHRW TGRFEAHLWD KNCSTSLQNK KKGRQGAYDS  120
EEAAARAYDL AALKYWGPET VLNFPLEEYE KERSEMEGVS REEYLASLRR RSSGFSRGVS  180
KYRGVARHHH NGRWEARIGR VLGNKYLYLG TFDTQEEAAK AYDLAAIEYR GANAVTNFDI  240
SCYLDQPQLL AQLQQEPQLL AQLQQEPQVV PALHEEPQDD DRSENAVQEL SSSEANTSSD  300
NNEPLAADDS AECTNEPLPI VDGIEESLWS PCLDYELDTM PGAYFSNSMN FSEWFNDEAF  360
EGGMEYLFEG CSSITEGGNS MDNSGVAEHN LFEECNMLED ISDFLDKDIS DFLDKDISIS  420
DRERISPQAN NISCPQKMIS VCN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54320.3	3e-72	AP2 family protein

Link Out ? help Back to Top
Ensembl	ONIVA03G39530.1