PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA03G40610.2

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

AP2

Protein Properties

Length: 415aa MW: 45314.6 Da PI: 8.0367

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA03G40610.2	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	22.4	3e-07	117	138	1	22
AP2 1 sgykGVrwdkkrgrWvAeIrdp 22 s+y+GV++++++grW+++I+ + ONIVA03G40610.2 117 SQYRGVTFYRRTGRWESHIWAY 138 78*****************984 PP
2	AP2	42.1	2.1e-13	190	240	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpseng...krkrfslgkfgtaeeAakaaiaarkkleg 55 s+++GV+ +k grW+A+ g +k+++lg f+t+ eAa+a+++a+ +++g ONIVA03G40610.2 190 SKFRGVTLHK-CGRWEAR---M---GqllGKKYIYLGLFDTEVEAARAYDRAAIRFNG 240 79******.7**...5...334336******99********99987 PP

Sequence ? help Back to Top
Protein Sequence Length: 415 aa Download sequence
MLLDLNVESP ERSGTSSSSV LNSGDAGGGG GGGGGGGLFR FDLLASSPDD DECSGEQHQL 60 PAASGIVTRQ LLPPPPPAAP SPAPAWQPPR RAAEDAALAQ RPVVAKKTRR GPRSRSSQYR 120 GVTFYRRTGR WESHIWAYDR AAIKFRGLEA DINFNLSDYE DDLKQMRNWT KEEFVHILRR 180 QSTGFARGSS KFRGVTLHKC GRWEARMGQL LGKKYIYLGL FDTEVEAARA YDRAAIRFNG 240 REAVTNFEPA SYNVDALPDA GNEAIVDGDL DLDLRISQPN ARDSKSDVAT TGLQLTCDSP 300 ESSNITVHQP MGSSPQWTVH HQSTPLPPQH QRLYPSHCLG FLPNLQERPM DRRPELGPMP 360 FPTQAWQMQA PSHLPLLHAA ASSGFSAGAG AGVAAATRRQ PPFPADHPFY FPPTA

Sequence ? help Back to Top

Protein Sequence Length: 415 aa Download sequence

MLLDLNVESP ERSGTSSSSV LNSGDAGGGG GGGGGGGLFR FDLLASSPDD DECSGEQHQL  60
PAASGIVTRQ LLPPPPPAAP SPAPAWQPPR RAAEDAALAQ RPVVAKKTRR GPRSRSSQYR  120
GVTFYRRTGR WESHIWAYDR AAIKFRGLEA DINFNLSDYE DDLKQMRNWT KEEFVHILRR  180
QSTGFARGSS KFRGVTLHKC GRWEARMGQL LGKKYIYLGL FDTEVEAARA YDRAAIRFNG  240
REAVTNFEPA SYNVDALPDA GNEAIVDGDL DLDLRISQPN ARDSKSDVAT TGLQLTCDSP  300
ESSNITVHQP MGSSPQWTVH HQSTPLPPQH QRLYPSHCLG FLPNLQERPM DRRPELGPMP  360
FPTQAWQMQA PSHLPLLHAA ASSGFSAGAG AGVAAATRRQ PPFPADHPFY FPPTA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36920.1	3e-76	AP2 family protein

Link Out ? help Back to Top
Ensembl	ONIVA03G40610.2