PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA03G40720.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

C2H2

Protein Properties

Length: 245aa MW: 25209.2 Da PI: 10.1596

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA03G40720.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.5	0.00021	100	122	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg+ F L H+r+H ONIVA03G40720.1 100 HECHICGQGFEMGQALGGHMRRH 122 79********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 245 aa Download sequence
MTKHPRDGEV ISLSLSLTLG AAADSGERKK PRRGSSPAAS GSGDFVCKTC SRAFPSFQAL 60 GGHRTSHLRG RHGLALGLAA ATAKETTKKV QEKPAAAATH ECHICGQGFE MGQALGGHMR 120 RHREEAAAAA AAGRPLATEH RLRQGGCQGK IAIEVIESRS SGGHRAGPNL EVFELGHVRS 180 GIGATTLAVT EESDTRGLGI NGASSCQALE GGVRGRPLVA GRGADGEGEK RAGAGEAEDK 240 GIRRT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G46080.1	3e-17	C2H2 family protein

Link Out ? help Back to Top
Ensembl	ONIVA03G40720.1