PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA03G43670.1
Organism
Oryza sativa f. spontanea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family MIKC_MADS
Protein Properties Length: 252aa    MW: 28643.4 Da    PI: 5.2341
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA03G43670.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF80.88.9e-261868151
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
           SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                     krie+ ++rqvtfskRr+g lKKA+EL vLCda+v v++fs +gkl++++s
  ONIVA03G43670.1 18 KRIEDATRRQVTFSKRRAGFLKKANELAVLCDAQVGVVVFSDKGKLFDFCS 68
                     79***********************************************96 PP
2K-box58.92.1e-20891791099
            K-box  10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslke.LqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                      ++++ e++  e+++L++ei++L+ ++R+  GedL+s s  + L qL+ qLe+sl+k+ ++K+el+ +q+e+++++ + ++e+n+ L +++ 
  ONIVA03G43670.1  89 TNRDDEQMVMEITRLRNEIDQLEASLRRQTGEDLSSVSTVDaLSQLQLQLESSLSKVHARKDELMSQQLEDMRRMHQTVHEQNNFLCRMMS 179
                      456678999****************************97655*******************************************988765 PP
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    
MDRRRGEVAM GRGKIEMKRI EDATRRQVTF SKRRAGFLKK ANELAVLCDA QVGVVVFSDK  60
GKLFDFCSPP VICFTVMRSP PENTRLQETN RDDEQMVMEI TRLRNEIDQL EASLRRQTGE  120
DLSSVSTVDA LSQLQLQLES SLSKVHARKD ELMSQQLEDM RRMHQTVHEQ NNFLCRMMSE  180
NWHSENWQSP GSGEASAMEA LTMLPPPAAA TTAAEAFNCF FPEEEKGVAA SSTLLQLWPQ  240
PHDGDQPDLR LW
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23260.22e-36MIKC_MADS family protein