PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA03G43680.1
Organism
Oryza sativa f. spontanea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family NF-YC
Protein Properties Length: 250aa    MW: 27750.1 Da    PI: 4.5964
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA03G43680.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC175.55.2e-55791821101
            NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdf 91 
                      ql++fw+++   ie++tdfknh+lPlarikki+kadedv+misaeaPv+++kace+fileltlrsw+h+eenkrrtl+k+diaaa+trtd++df
  ONIVA03G43680.1  79 QLQQFWAERladIEQTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEIFILELTLRSWMHTEENKRRTLQKNDIAAAITRTDMYDF 172
                      89*****98888********************************************************************************** PP

            NF-YC  92 lvdivprdel 101
                      lvdivprd+l
  ONIVA03G43680.1 173 LVDIVPRDDL 182
                      ********87 PP
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    
MEPSSQPQPA IGVVAGGSQV YPAYPPAATV PTAPAVIPAG SQPAPSFPAN PDQLSAQHQL  60
VYQQAQQFHQ QLQQQQQRQL QQFWAERLAD IEQTTDFKNH SLPLARIKKI MKADEDVRMI  120
SAEAPVIFAK ACEIFILELT LRSWMHTEEN KRRTLQKNDI AAAITRTDMY DFLVDIVPRD  180
DLKEEGVGLP RAGLPPLGVP ADSYPYGYYV PQQQVPGAGI AYGGQQGHPG YLWQDPQEQQ  240
EEPPAEQQSD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1152158RRTLQKN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56170.11e-66NF-YC family protein