PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA04G00840.1
Organism
Oryza sativa f. spontanea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family MYB
Protein Properties Length: 142aa    MW: 16725 Da    PI: 9.9985
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA04G00840.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.94.7e-085341948
                     TTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding 19 lGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +G g+W++ ar+  ++Rt+k+c++rw++yl
  ONIVA04G00840.1  5 HGEGRWNALARCAWLKRTGKSCRLRWLNYL 34
                     9999**********99************97 PP
2Myb_DNA-binding40.46.7e-134083146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                     rg++T++E++l+++++  +G++  ++Ia++++ gRt++++k++w++
  ONIVA04G00840.1 40 RGNMTAQEQLLILELHGWWGNR-RSKIAQHLP-GRTDNEIKNYWRT 83
                     89********************.*********.***********96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 142 aa     Download sequence    
MLDCHGEGRW NALARCAWLK RTGKSCRLRW LNYLRPDVSR GNMTAQEQLL ILELHGWWGN  60
RRSKIAQHLP GRTDNEIKNY WRTRVQKHAK HLNCDVNSQQ FNDLMRYLWM PRLLDRIHRS  120
QSQSHDTDDA DLSAASCITV TA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G48000.13e-64MYB family protein