PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA04G01430.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

M-type_MADS

Protein Properties

Length: 184aa MW: 20159.1 Da PI: 9.2906

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA04G01430.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	53.9	2.2e-17	9	53	1	45
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 k+i n r v fskRr+ ++KKA+ELS+LC+++vav ++s+ gk ONIVA04G01430.1 9 KPIANRKARDVCFSKRRQVVIKKANELSILCGVNVAVAVLSPAGK 53 6899**************************************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 184 aa Download sequence
MRRGKVKIKP IANRKARDVC FSKRRQVVIK KANELSILCG VNVAVAVLSP AGKPFFFGCP 60 TVQAVTRRLL GVGPSNPTMG DGGNGDETDI VHELNLKYQK LQQENEVEKK KNQRGQDVRL 120 ASDVNALGLH ELEAFDSNFN VIDDIVDSND VVKNAKQTAE PQTQMSVALT LQFMLDGQSI 180 APSL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G34440.1	7e-20	M-type_MADS family protein

Link Out ? help Back to Top
Ensembl	ONIVA04G01430.1