PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA04G06980.3

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

bHLH

Protein Properties

Length: 419aa MW: 43290.5 Da PI: 6.5847

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA04G06980.3	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	30.8	5.3e-10	247	294	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR+ri +++ L++l+P + +k Ka +L + ++Y++sLq ONIVA04G06980.3 247 SHSLAERVRRERISERMKLLQSLVPGC----NKITGKALMLDEIINYVQSLQ 294 8************************....999***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 419 aa Download sequence
MADEHFFPAG DYFSTSSSGA GTGGAGALLP AAAYGTMTMM PPWAVAAAEQ MMMMAPAAAA 60 AEFDSALSSL VSSPQGGGGG DEMAAIGDLI GRLGSICSHG GASANNSCYS TPLSSPPRAA 120 PPPPFRGYAA AGGRLSRVSS SKSLGGAAAA LDSSEADMNP TTAAAADQPS KPSAAAARKR 180 KSSAKPKASS SSLPTATATT NASPKRSKVA AGAGDDGDGD ADAAEEKPEP AKDYIHVRAR 240 RGQATDSHSL AERVRRERIS ERMKLLQSLV PGCNKITGKA LMLDEIINYV QSLQRQVEFL 300 SMKLATMNPQ LDFDSHYMPS KDMSHMPVPA YPSGDPTTTT AFSYTGSPAT ADPFTVYNCW 360 ELDLHTAMQM GATPGLSQDV PIATMAPSPS PLPHHPPLHG FYGGQQQQGT TVNHMKAEP

Sequence ? help Back to Top

Protein Sequence Length: 419 aa Download sequence

MADEHFFPAG DYFSTSSSGA GTGGAGALLP AAAYGTMTMM PPWAVAAAEQ MMMMAPAAAA  60
AEFDSALSSL VSSPQGGGGG DEMAAIGDLI GRLGSICSHG GASANNSCYS TPLSSPPRAA  120
PPPPFRGYAA AGGRLSRVSS SKSLGGAAAA LDSSEADMNP TTAAAADQPS KPSAAAARKR  180
KSSAKPKASS SSLPTATATT NASPKRSKVA AGAGDDGDGD ADAAEEKPEP AKDYIHVRAR  240
RGQATDSHSL AERVRRERIS ERMKLLQSLV PGCNKITGKA LMLDEIINYV QSLQRQVEFL  300
SMKLATMNPQ LDFDSHYMPS KDMSHMPVPA YPSGDPTTTT AFSYTGSPAT ADPFTVYNCW  360
ELDLHTAMQM GATPGLSQDV PIATMAPSPS PLPHHPPLHG FYGGQQQQGT TVNHMKAEP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07340.1	1e-48	bHLH family protein

Link Out ? help Back to Top
Ensembl	ONIVA04G06980.3